In Escherichia coli the mismatch repair system repairs the mis-incorporated base which is not removed by the proof reading activity of DNA polymerase. While doing so the repair system has to decide which DNA strand is newly synthesized and which DNA strand is parental. Mismatch repair system does it by recognizing

1
GATC sequence nearby.
2
Specific repetitious sequence.
3
hemimethylated GATC sequence nearby.
4
Specific pallindromic sequence nearby.
5
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